Tag Archives: molecules

Researchers use engineered viruses to provide quantum-based enhancement of energy transport:MIT Research

Quantum physics meets genetic engineering

Researchers use engineered viruses to provide quantum-based enhancement of energy transport.

By David Chandler


CAMBRIDGE, Mass.–Nature has had billions of years to perfect photosynthesis, which directly or indirectly supports virtually all life on Earth. In that time, the process has achieved almost 100 percent efficiency in transporting the energy of sunlight from receptors to reaction centers where it can be harnessed — a performance vastly better than even the best solar cells.

One way plants achieve this efficiency is by making use of the exotic effects of quantum mechanics — effects sometimes known as “quantum weirdness.” These effects, which include the ability of a particle to exist in more than one place at a time, have now been used by engineers at MIT to achieve a significant efficiency boost in a light-harvesting system.

Surprisingly, the MIT researchers achieved this new approach to solar energy not with high-tech materials or microchips — but by using genetically engineered viruses.

This achievement in coupling quantum research and genetic manipulation, described this week in the journal Nature Materials, was the work of MIT professors Angela Belcher, an expert on engineering viruses to carry out energy-related tasks, and Seth Lloyd, an expert on quantum theory and its potential applications; research associate Heechul Park; and 14 collaborators at MIT and in Italy.

Lloyd, a professor of mechanical engineering, explains that in photosynthesis, a photon hits a receptor called a chromophore, which in turn produces an exciton — a quantum particle of energy. This exciton jumps from one chromophore to another until it reaches a reaction center, where that energy is harnessed to build the molecules that support life.

But the hopping pathway is random and inefficient unless it takes advantage of quantum effects that allow it, in effect, to take multiple pathways at once and select the best ones, behaving more like a wave than a particle.

This efficient movement of excitons has one key requirement: The chromophores have to be arranged just right, with exactly the right amount of space between them. This, Lloyd explains, is known as the “Quantum Goldilocks Effect.”

That’s where the virus comes in. By engineering a virus that Belcher has worked with for years, the team was able to get it to bond with multiple synthetic chromophores — or, in this case, organic dyes. The researchers were then able to produce many varieties of the virus, with slightly different spacings between those synthetic chromophores, and select the ones that performed best.

In the end, they were able to more than double excitons’ speed, increasing the distance they traveled before dissipating — a significant improvement in the efficiency of the process.

The project started from a chance meeting at a conference in Italy. Lloyd and Belcher, a professor of biological engineering, were reporting on different projects they had worked on, and began discussing the possibility of a project encompassing their very different expertise. Lloyd, whose work is mostly theoretical, pointed out that the viruses Belcher works with have the right length scales to potentially support quantum effects.

In 2008, Lloyd had published a paper demonstrating that photosynthetic organisms transmit light energy efficiently because of these quantum effects. When he saw Belcher’s report on her work with engineered viruses, he wondered if that might provide a way to artificially induce a similar effect, in an effort to approach nature’s efficiency.

“I had been talking about potential systems you could use to demonstrate this effect, and Angela said, ‘We’re already making those,’” Lloyd recalls. Eventually, after much analysis, “We came up with design principles to redesign how the virus is capturing light, and get it to this quantum regime.”

Within two weeks, Belcher’s team had created their first test version of the engineered virus. Many months of work then went into perfecting the receptors and the spacings.

Once the team engineered the viruses, they were able to use laser spectroscopy and dynamical modeling to watch the light-harvesting process in action, and to demonstrate that the new viruses were indeed making use of quantum coherence to enhance the transport of excitons.

“It was really fun,” Belcher says. “A group of us who spoke different [scientific] languages worked closely together, to both make this class of organisms, and analyze the data. That’s why I’m so excited by this.”

While this initial result is essentially a proof of concept rather than a practical system, it points the way toward an approach that could lead to inexpensive and efficient solar cells or light-driven catalysis, the team says. So far, the engineered viruses collect and transport energy from incoming light, but do not yet harness it to produce power (as in solar cells) or molecules (as in photosynthesis). But this could be done by adding a reaction center, where such processing takes place, to the end of the virus where the excitons end up.

The research was supported by the Italian energy company Eni through the MIT Energy Initiative. In addition to MIT postdocs Nimrod Heldman and Patrick Rebentrost, the team included researchers at the University of Florence, the University of Perugia, and Eni.

Source:MIT News Office

Complex Organic Molecules Discovered in Infant Star System

The new discovery hints that the building blocks of the chemistry of life are universal.

For the first time, astronomers have detected the presence of complex organic molecules, the building blocks of life, in a protoplanetary disc surrounding a young star. The discovery, made with the Atacama Large Millimeter/submillimeter Array (ALMA), reaffirms that the conditions that spawned the Earth and Sun are not unique in the Universe. The results are published in the 9 April 2015 issue of the journal Nature.

Artist impression of the protoplanetary disc surrounding the young star MWC 480. ALMA has detected the complex organic molecule methyl cyanide in the outer reaches of the disc in the region where comets are believed to form. This is another indication that complex organic chemistry, and potentially the conditions necessary for life, is universal. Credit: B. Saxton (NRAO/AUI/NSF)
Artist impression of the protoplanetary disc surrounding the young star MWC 480. ALMA has detected the complex organic molecule methyl cyanide in the outer reaches of the disc in the region where comets are believed to form. This is another indication that complex organic chemistry, and potentially the conditions necessary for life, is universal.
B. Saxton (NRAO/AUI/NSF)

The new ALMA observations reveal that the protoplanetary disc surrounding the young star MWC 480 [1] contains large amounts of methyl cyanide (CH3CN), a complex carbon-based molecule. There is enough methyl cyanide around MWC 480 to fill all of Earth’s oceans.

Both this molecule and its simpler cousin hydrogen cyanide (HCN) were found in the cold outer reaches of the star’s newly formed disc, in a region that astronomers believe is analogous to the Kuiper Belt — the realm of icy planetesimals and comets in our own Solar System beyond Neptune.

Comets retain a pristine record of the early chemistry of the Solar System, from the period of planet formation. Comets and asteroids from the outer Solar System are thought to have seeded the young Earth with water and organic molecules, helping set the stage for the development of primordial life.

“Studies of comets and asteroids show that the solar nebula that spawned the Sun and planets was rich in water and complex organic compounds,” noted Karin Öberg, an astronomer with the Harvard-Smithsonian Center for Astrophysics in Cambridge, Massachusetts, USA, and lead author of the new paper.

“We now have even better evidence that this same chemistry exists elsewhere in the Universe, in regions that could form solar systems not unlike our own.” This is particularly intriguing, Öberg notes, since the molecules found in MWC 480 are also found in similar concentrations in the Solar System’s comets.

The star MWC 480, which is about twice the mass of the Sun, is located 455 light-years away in the Taurus star-forming region. Its surrounding disc is in the very early stages of development — having recently coalesced out of a cold, dark nebula of dust and gas. Studies with ALMA and other telescopes have yet to detect any obvious signs of planet formation in it, although higher resolution observations may reveal structures similar to HL Tauri, which is of a similar age.

Astronomers have known for some time that cold, dark interstellar clouds are very efficient factories for complex organic molecules — including a group of molecules known as cyanides. Cyanides, and most especially methyl cyanide, are important because they contain carbon–nitrogen bonds, which are essential for the formation of amino acids, the foundation of proteins and the building blocks of life.

Until now, it has remained unclear, however, if these same complex organic molecules commonly form and survive in the energetic environment of a newly forming solar system, where shocks and radiation can easily break chemical bonds.

By exploiting ALMA’s remarkable sensitivity [2] astronomers can see from the latest observations that these molecules not only survive, but flourish.

Importantly, the molecules ALMA detected are much more abundant than would be found in interstellar clouds. This tells astronomers that protoplanetary discs are very efficient at forming complex organic molecules and that they are able to form them on relatively short timescales [3].

As this system continues to evolve, astronomers speculate that it’s likely that the organic molecules safely locked away in comets and other icy bodies will be ferried to environments more nurturing to life.

“From the study of exoplanets, we know the Solar System isn’t unique in its number of planets or abundance of water,” concluded Öberg. “Now we know we’re not unique in organic chemistry. Once more, we have learnt that we’re not special. From a life in the Universe point of view, this is great news.”

[1] This star is only about one million years old. By comparison the Sun is more than four billion years old. The name MWC 480 refers to the Mount Wilson Catalog of B and A stars with bright hydrogen lines in their spectra.

[2] ALMA is able to detect the faint millimetre-wavelength radiation that is naturally emitted by molecules in space. For these most recent observations, the astronomers used only a portion of ALMA’s 66 antennas when the telescope was in its lower-resolution configuration. Further studies of this and other protoplanetary discs with ALMA’s full capabilities will reveal additional details about the chemical and structural evolution of stars and planets.

[3] This rapid formation is essential to outpace the forces that would otherwise break the molecules apart. Also, these molecules were detected in a relatively serene part of the disc, roughly 4.5 to 15 billion kilometres from the central star. Though very distant by Solar System standards, in MWC 480’s scaled-up dimensions, this would be squarely in the comet-forming zone.

Source: ESO


Nobel Chemistry 2014: “for the development of super-resolved fluorescence microscopy”

The Royal Swedish Academy of Sciences has decided to award the Nobel Prize in Chemistry for 2014 to

Eric Betzig
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA,

Stefan W. Hell
Max Planck Institute for Biophysical Chemistry, Göttingen, and German Cancer Research Center, Heidelberg, Germany


William E. Moerner
Stanford University, Stanford, CA, USA

“for the development of super-resolved fluorescence microscopy”

Surpassing the limitations of the light microscope

For a long time optical microscopy was held back by a presumed limitation: that it would never obtain a better resolution than half the wavelength of light. Helped by fluorescent molecules the Nobel Laureates in Chemistry 2014 ingeniously circumvented this limitation. Their ground-breaking work has brought optical microscopy into the nanodimension.

In what has become known as nanoscopy, scientists visualize the pathways of individual molecules inside living cells. They can see how molecules create synapses between nerve cells in the brain; they can track proteins involved in Parkinson’s, Alzheimer’s and Huntington’s diseases as they aggregate; they follow individual proteins in fertilized eggs as these divide into embryos.

It was all but obvious that scientists should ever be able to study living cells in the tiniest molecular detail. In 1873, the microscopist Ernst Abbe stipulated a physical limit for the maximum resolution of traditional optical microscopy: it could never become better than 0.2 micrometres. Eric BetzigStefan W. Helland William E. Moerner are awarded the Nobel Prize in Chemistry 2014 for having bypassed this limit. Due to their achievements the optical microscope can now peer into the nanoworld.

Two separate principles are rewarded. One enables the method stimulated emission depletion (STED) microscopy, developed by Stefan Hell in 2000. Two laser beams are utilized; one stimulates fluorescent molecules to glow, another cancels out all fluorescence except for that in a nanometre-sized volume. Scanning over the sample, nanometre for nanometre, yields an image with a resolution better than Abbe’s stipulated limit.

Eric Betzig and William Moerner, working separately, laid the foundation for the second method, single-molecule microscopy. The method relies upon the possibility to turn the fluorescence of individual molecules on and off. Scientists image the same area multiple times, letting just a few interspersed molecules glow each time. Superimposing these images yields a dense super-image resolved at the nanolevel. In 2006 Eric Betzig utilized this method for the first time.

Today, nanoscopy is used world-wide and new knowledge of greatest benefit to mankind is produced on a daily basis.

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Eric Betzig, U.S. citizen. Born 1960 in Ann Arbor, MI, USA. Ph.D. 1988 from Cornell University, Ithaca, NY, USA. Group Leader at Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.

Stefan W. Hell, German citizen. Born 1962 in Arad, Romania. Ph.D. 1990 from the University of Heidelberg, Germany. Director at the Max Planck Institute for Biophysical Chemistry, Göttingen, and Division head at the German Cancer Research Center, Heidelberg, Germany.

William E. Moerner, U.S. citizen. Born 1953 in Pleasanton, CA, USA. Ph.D. 1982 from Cornell University, Ithaca, NY, USA. Harry S. Mosher Professor in Chemistry and Professor, by courtesy, of Applied Physics at Stanford University, Stanford, CA, USA.

The Prize amount: SEK 8 million, to be shared equally between the Laureates.

Source: NobelPrize.Org